[QUERY LOCUS] MAGPIE:scophmmx--Brassica--Oleracea_contig_singlet--ES945933
[QTEXT] MAGPIE:scophmmx--Brassica--Oleracea_contig_singlet--ES945933
[SEARCH TYPE] AA (AMINO ACID)
[SCALE FACTOR] 1
[SCORES]
RANK SCORES QF TARGET LOCUS NAME ACCESSION# TF TARGET E_VALUE DESCRIPTION
1 146.88 D 0040104 0040104 1 superfam 2.4e-042 Ribosomal protein S5 domain 2-like
2 145.20 D 0037014 0037014 1 superfam 1.0e-042 Ribosomal protein S5 domain 2-like
3 144.52 D 0043463 0043463 1 superfam 1.8e-041 Ribosomal protein S5 domain 2-like
4 97.32 D 0042490 0042490 1 superfam 4.2e-030 Ribosomal protein S5 domain 2-like
[BEGIN ALIGNMENTS TIME] Tue Jul 8 00:09:43 2008
[ALIGNMENTS]
_________________________________________________________________________
RANK 1 Score = 146.88 E_Value = 2.4e-042
Q = SOC_xdong_0069185875.seq QF = D #Q Symbols = 498
T = 0040104 TF = 1 #T Symbols = 172
A = 0040104
D = Ribosomal protein S5 domain 2-like
Identical Match = 57 Similar = 135 Total # Of Gaps = 0
Identity: Alignment = 34% Query = 34% Target = 33%
Similarity: Alignment = 82% Query = 81% Target = 78%
QS = 9 QE = 497 TS = 6 TE = 168
Q 9 GTTAGCTGGCTAACTACCGATAAGAAACCGCTCCATGATGTGCTGGGTTTCCGGAAAGAG
||| ...............|||......||||||... ...
T 6 ValLysTyrTyrAsnLysAsnLysAspValLeuHisProTrpProPheTyrPheValTyr
Q 69 ATAAATGGCACCACCGTTGACGTTGCACTTCAATGGTGCTCAGATGCCTATTCAGACACG
... ... ... ...||| |||.........
T 26 GluLysAspAsnIleArgTrpGluTrpAlaMetGlnTrpAsnAspGlyTyrGlnGluAsn
Q 129 ATGCTGGGATATGCGAATAGTATTCGCACTATTGATGGTGGGACACATATTGAAGGTGTG
...... ......|||...|||...|||......||||||||||||......|||...
T 46 GlnTyrSerPheValAsnAsnIleProThrHisGluGlyGlyThrHisValAsnGlyPhe
Q 189 AAGGCTTCGTTAACAAGAACTCTAAATAGCCTCGCAAAAAAGTTAAAGGTTATCAAGGAG
...... |||||||||...||||||......||||||||| .........|||...
T 66 ArgAspAlaLeuThrArgValLeuAsnGluTyrAlaLysLysHisAsnLeuLeuLysLys
Q 249 AAGGATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGCATTGTCTCAGTC
||||||............|||......|||||||||||||||............||||||
T 86 LysAspValAsnIleThrGlyAspAspValArgGluGlyLeuTrpAlaValIleSerVal
Q 309 AAGGTTCCTGATCCTGAGTTTGAAGGTCAAACAAAGACGAGACTGGGGAATCCAGAGGTG
|||...|||...|||...||||||||||||||||||......|||...|||...||||||
T 106 LysIleProAsnProGlnPheGluGlyGlnThrLysGluLysLeuThrAsnArgGluVal
Q 369 AGAAAAATTGTTGACCAATCACTCCAGGAGTACCTCACGGAGTACTTTGAATTGCATCCT
||| ...|||...... ......||| .................. ...|||
T 126 ArgPhePheValGluCysValValSerGluHisPheIleHisTrpLeuMetGluAsnPro
Q 429 GATGTTCTTGAAAGCATTATTTCCAAATCCTTGAATGCGTACAAGGCTGCTCTGGCTGCC
...|||...... |||......||| ...............||| ...||||||
T 146 GluValAlaLysLysIleValGluLysIleIleGluTrpAlaGlnAlaArgGluAlaAla
Q 489 AAGAGGGCT
......|||
T 166 ArgLysAla
_________________________________________________________________________
RANK 2 Score = 145.20 E_Value = 1.0e-042
Q = SOC_xdong_0069185875.seq QF = D #Q Symbols = 498
T = 0037014 TF = 1 #T Symbols = 172
A = 0037014
D = Ribosomal protein S5 domain 2-like
Identical Match = 62 Similar = 142 Total # Of Gaps = 4
Identity: Alignment = 37% Query = 37% Target = 36%
Similarity: Alignment = 86% Query = 85% Target = 82%
QS = 9 QE = 497 TS = 6 TE = 168
Q 9 GTTAGCTGGCTAACTACCGATAAGAAACCGCTCCAT---GATGTGCTGGGTTTCCGGAAA
||| ......... ||||||......|||||| |||...... |||...
T 6 ValLysTyrTyrAsnLysAspLysAspValLeuHisProAspProPheTyrPheGluTyr
Q 66 GAGATAAATGGCACCACCGTTGACGTTGCACTTCAATGGTGCTCAGATGCCTATTCAGAC
|||......... .........|||...|||||| |||......
T 26 GluLysAspAsnIleArgTrpGluTrpAlaMetGlnTrp-Asn-Asp-GlyTyrGlnGlu
Q 126 ACGATGCTGGGATATGCGAATAGTATTCGCACTATTGATGGTGGGACACATATTGAAGGT
......... ......|||...|||...|||......||||||||||||......|||
T 45 AsnGlnTyrSerPheValAsnAsnIleProThrHisGluGlyGlyThrHisValAsnGly
Q 186 GTGAAGGCTTCGTTAACAAGAACTCTAAATAGCCTCGCAAAAAAGTTAAAGGTTATCAAG
......... |||||||||...||||||.........|||||| .........|||
T 65 PheArgAspAlaLeuThrArgValLeuAsnGluTyrCysLysLysHisAsnLeuLeuLys
Q 246 GAGAAGGATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGCATTGTCTCA
...||||||............|||......||||||||||||...............|||
T 85 LysLysAspValAsnIleThrGlyAspAspValArgGluGlyMetTrpAlaValIleSer
Q 306 GTCAAGGTTCCTGATCCTGAGTTTGAAGGTCAAACAAAGACGAGACTGGGGAATCCAGAG
||||||...|||...|||...||||||||||||||||||......|||...|||...|||
T 105 ValLysIleProAsnProGlnPheGluGlyGlnThrLysGluLysLeuThrAsnArgGlu
Q 366 GTGAGAAAAATTGTTGACCAATCACTCCAGGAGTACCTCACGGAGTACTTTGAATTGCAT
|||||| ...|||...... ......||| .................. ...
T 125 ValArgPhePheValGluCysValValSerGluHisPheIleHisTrpLeuMetGluAsn
Q 426 CCTGATGTTCTTGAAAGCATTATTTCCAAATCCTTGAATGCGTACAAGGCTGCTCTGGCT
|||...|||...... |||... ||| ...|||.........||| ...|||
T 145 ProGluValAlaLysLysIleValGluLysIleIleAsnTrpAlaGlnAlaArgGluAla
Q 486 GCCAAGAGGGCT
|||......|||
T 165 AlaArgLysAla
_________________________________________________________________________
RANK 3 Score = 144.52 E_Value = 1.8e-041
Q = SOC_xdong_0069185875.seq QF = D #Q Symbols = 498
T = 0043463 TF = 1 #T Symbols = 167
A = 0043463
D = Ribosomal protein S5 domain 2-like
Identical Match = 61 Similar = 143 Total # Of Gaps = 5
Identity: Alignment = 37% Query = 36% Target = 36%
Similarity: Alignment = 88% Query = 86% Target = 85%
QS = 9 QE = 491 TS = 7 TE = 167
Q 9 GTTAGCTGGCTAACTACCGATAAGAAACCGCTCCAT---GATGTGCTGGGTTTCCGGAAA
|||..................|||......|||||| ......... |||...
T 7 ValLysTyrTyrAsnLysAsnLysAspValLeuHisAspGluProPheTyrPheGluTyr
Q 66 GAGATAAATGGCACCACCGTTGACGTTGCACTTCAATGGTGCTCAGATGCCTATTCAGAC
|||......... ............|||...||||||... ||| ...
T 27 GluPheAspAsnIleArgTrpGluTrpAlaMetGlnTrpAsnAspAspTyrGlyGluPhe
Q 126 ACGATGCTGGGATATGCGAATAGTATTCGCACTATTGATGGTGGGACACATATTGAAGGT
......... ......|||...|||...|||......||||||||||||......|||
T 47 GlnGlnTyrSerPheValAsnAsnIleProThrHisGluGlyGlyThrHisValAsnGly
Q 186 GTGAAGGCTTCGTTAACAAGAACTCTAAATAGCCTCGCAAAAAAGTTAAAGGTTATCAAG
......... ||||||||||||||||||......||||||||| ...|||
T 67 PheArgAspAlaLeuThrArgThrLeuAsnGluTyrAlaLysLys-HisAsnLeu-Leu-
Q 246 GAGAAGGATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGCATTGTCTCA
...||||||............|||......|||||||||||||||............|||
T 86 LysLysAspValAsnIleThrGlyAspAspValArgGluGlyLeuTrpAlaValIleSer
Q 306 GTCAAGGTTCCTGATCCTGAGTTTGAAGGTCAAACAAAGACGAGACTGGGGAATCCAGAG
||||||...|||...|||...||||||||||||||||||......|||...|||...|||
T 106 ValLysIleProAsnProGlnPheGluGlyGlnThrLysGluLysLeuThrAsnArgGlu
Q 366 GTGAGAAAAATTGTTGACCAATCACTCCAGGAGTACCTCACGGAGTACTTTGAATTGCAT
|||||| ...|||...... ......|||..................... ...
T 126 ValArgPhePheValGluCysValValSerGluHisPheIleHisTrpLeuMetGluAsn
Q 426 CCTGATGTTCTTGAAAGCATTATTTCCAAATCCTTGAATGCGTACAAGGCTGCTCTGGCT
|||............ ||||||...... ......|||......|||...||||||
T 146 ProAsnIleAlaLysLysIleIleGluTrpAlaIlePheAlaAlaGlnAlaArgLeuAla
Q 486 GCCA^AG
...
T 166 -AlaArg
_________________________________________________________________________
RANK 4 Score = 97.32 E_Value = 4.2e-030
Q = SOC_xdong_0069185875.seq QF = D #Q Symbols = 498
T = 0042490 TF = 1 #T Symbols = 161
A = 0042490
D = Ribosomal protein S5 domain 2-like
Identical Match = 29 Similar = 61 Total # Of Gaps = 3
Identity: Alignment = 39% Query = 17% Target = 18%
Similarity: Alignment = 82% Query = 36% Target = 37%
QS = 243 QE = 461 TS = 89 TE = 161
Q 243 AAGGAGAAGGATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGCATTGTC
|||...||||||............|||......||||||||||||...............
T 89 LysLysLysAspValAsnIleLysGlyAspAspValArgGluGlyMetTrpAlaValIle
Q 303 TCAGTCAAGGTTCCTGATCCTGAGTTTGAAGGTCAAACAAAGACGAGACTGGGGAATCCA
|||||||||...|||...|||...||||||||||||||||||......|||...|||...
T 109 SerValLysIleProAsnProGlnPheGluGlyGlnThrLysGluLysLeuThrAsnArg
Q 363 GAGGTGAGAAAAATTGTTGACCAATCACTCCAGGAGTACCTCACGGAGTACTTTGAA---
||||||||| ||||||...... ......|||.....................
T 129 GluValArgPheIleValGluCysValValSerGluHisPheMetHisTrpLeuMetGlu
Q 420 TTGCATCCTGATGTTCTTGAAAGCATTATTTCCAAATCCT^TG
||| |||......
T 149 AsnPro---IleVal-GluLysIleIleGluTrpAlaGlnAla
[END ALIGNMENTS TIME] Tue Jul 8 00:09:43 2008
[QUERY SEQUENCE] /decypher/query/SOC_xdong_0069185875.seq
[QUERY LOCUS]